Message boards : Number crunching : Rosetta 4.0+
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
1086028567 1085948412 and others... ERROR: Unrecognized residue: DRH |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
1084416855 Again. Please there is no one who can debug this amount of errors (cannot open files, out of memory, etc)?? |
robertmiles Send message Joined: 16 Jun 08 Posts: 1232 Credit: 14,269,631 RAC: 4,447 |
1084416855 The last few errors reported all look like there was an error in the input files, not an error in the application program or an error specific to your computer. Usually the first line containing ERROR: gives the error, and any others are only the result of the program not being able to continue properly after the error. Sometimes, additional lines of error messages are needed to pin down why the error occurred, especially if the error was in the program. For this task, it looks like input file 00001.200.9mers was not sent along with the task and therefore could not be opened. The other recently reported errors look more like the program found an error in one of the input files, and therefore could not continue properly past that point. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
The last few errors reported all look like there was an error in the input files, not an error in the application program or an error specific to your computer...... Uh, interesting. But i don't care if the problem is the exe or the input files. I think that, if there are problems, it's better to resolve these. In this thread we don't see admins since....i don't remember. I don't know even if they are reading this thread. A message like "Ok, guys, we release soon a new kind of input files to resolve your errors" or even if simple "we are working on it", it's not difficult to write. Or, maybe, they are not interesting in our "wasting cpu's time". |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
In this thread we don't see admins since....i don't remember. I don't know even if they are reading this thread. They hang out over here: https://boinc.bakerlab.org/rosetta/forum_thread.php?id=1000 |
robertmiles Send message Joined: 16 Jun 08 Posts: 1232 Credit: 14,269,631 RAC: 4,447 |
In this thread we don't see admins since....i don't remember. I don't know even if they are reading this thread. Not since January, though! |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
In this thread we don't see admins since....i don't remember. I don't know even if they are reading this thread. Mod.Sense is a great, but he is not an admin or a developer of the project. |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
Mod.Sense is a great, but he is not an admin or a developer of the project. Undoubtedly so. But if rjs5 can't get their attention, we have no hope. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1232 Credit: 14,269,631 RAC: 4,447 |
Do we need to start threatening to move to other BOINC projects if we don't get more admin attention? |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
From their point of view, it may not be that serious. They are still sending out work and accepting results, so it is only the people who look at "validation pending" who see the problem. It may just be that they are upgrading their server software and don't see any reason to notify us. That is not ideal customer relations, but not a crisis. EDIT: we are back in business, and my credits are up. |
adrianxw Send message Joined: 18 Sep 05 Posts: 653 Credit: 11,840,739 RAC: 225 |
What is the problem people are seeing? I just looked at my results and have nothing odd, no errors. Wave upon wave of demented avengers march cheerfully out of obscurity into the dream. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
I just looked at my results and have nothing odd, no errors. Good for you. But in this thread (and in others) people report errors/bugs, without any answer. For example, me this morning the same error of 4 days ago: ERROR: Unrecognized residue: DRH |
adrianxw Send message Joined: 18 Sep 05 Posts: 653 Credit: 11,840,739 RAC: 225 |
My post implies there are no errors or bugs in the application as I crunch quite a few workunits. Your error lines indicate that there is a data error in the work unit, an unrecognised residue, (monomer), in a polypeptide, but you don't report the work unit, it is quite possible, however, that the project can find that out from looking at your results, which I, of course, cannot do. The final BOINC error is probably because the job failed to start, and therefore did not create an output file. Wave upon wave of demented avengers march cheerfully out of obscurity into the dream. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
My post implies there are no errors or bugs in the application as I crunch quite a few workunits. Again. I don't care if the problem is the application or the data. If the problem is the application, debug the app. If the problem is the data, work on data. but you don't report the work unit I report always if i have problems Message 90975, 08/05/2019 And this morning 1086416267 You can see also my reports on Ralph@Home during these years of volunteer in beta project. The final BOINC error is probably because the job failed to start, and therefore did not create an output file. Why i have NO problems with other projects (WCG, Tn-Grid, LHC, etc)? |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
1084416855 And, still....1086460738 No one can send the correct input file? |
robertmiles Send message Joined: 16 Jun 08 Posts: 1232 Credit: 14,269,631 RAC: 4,447 |
1084416855 Rather few people have write access to the server, which they need in order to add that file to the list of input files that need to be sent along with these tasks. Even fewer have a copy of that file or even know what it should contain. The real problem is that too few admins are reading this thread, seeing the problem reports, and knowing who to contact in order to get them fixed. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1991 Credit: 9,520,400 RAC: 12,860 |
1084416855 Still this error.... |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.07_windows_intelx86.exe -beta -frag3 00001.200.3mers -frag9 00001.200.9mers -abinitio::increase_cycles 10 -mute all -abinitio::fastrelax -relax::default_repeats 5 -abinitio::rsd_wt_helix 0.5 -abinitio::rsd_wt_loop 0.5 -abinitio::use_filters false -ex1 -ex2aro -in:file:boinc_wu_zip hugh_8_17_seq_24_fragments_fold_data.zip -out:file:silent default.out -silent_gz -mute all -in:file:fasta 00001.fasta -out:file:silent_struct_type binary -nstruct 10000 -cpu_run_time 28800 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2044900 ERROR: ERROR: FragmentIO: could not open file 00001.200.9mers ERROR:: Exit from: ......srccorefragmentFragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out No different than the rest of you...really makes me wonder whats happening in la la land. |
adrianxw Send message Joined: 18 Sep 05 Posts: 653 Credit: 11,840,739 RAC: 225 |
Still nothing here. My machines are crunching, exporting, end of story. Windows 8.1 x64. Something strange is happening. Wave upon wave of demented avengers march cheerfully out of obscurity into the dream. |
Jim1348 Send message Joined: 19 Jan 06 Posts: 881 Credit: 52,257,545 RAC: 0 |
Still nothing here. My machines are crunching, exporting, end of story. Windows 8.1 x64. Something strange is happening. I wasn't seeing them here either. Then I got one (Ubuntu 18.04). https://boinc.bakerlab.org/rosetta/result.php?resultid=1087794059 So they happen, just not very frequently. It only took 10 seconds, so I don't think the scientists will be spending much time trying to fix it. |
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Number crunching :
Rosetta 4.0+
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