Message boards : Number crunching : Problems and Technical Issues with Rosetta@home
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YAG Send message Joined: 13 Oct 19 Posts: 7 Credit: 13,015,426 RAC: 0 |
I am receiving the error "Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). ERROR:: Exit from: src/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc line: 2264" in the preetham_gen_* tasks. |
computezrmle Send message Joined: 9 Dec 11 Posts: 63 Credit: 9,680,103 RAC: 0 |
The minimum number of residues for a cyclic peptide is 4. Nowadays you need a specialist for nearly everything. They obviously don't have a can-count-to-4-specialist on their payroll. |
wynx Send message Joined: 4 Feb 11 Posts: 1 Credit: 4,590,788 RAC: 3,508 |
I am receiving the error "Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). Getting the same thing here, lots of preetham_gen tasks with this issue atm. |
Tomcat雄猫 Send message Joined: 20 Dec 14 Posts: 180 Credit: 5,386,173 RAC: 0 |
I haven't seen a working (on Windows) Rosetta 4.20 in ages. These preetham tasks appear to have problems: preetham_gen_16837_0001_0001_0_SAVE_ALL_OUT_2911317_735_1 <core_client_version>7.16.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1)</message> <stderr_txt> command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @preetham_gen_16837_0001_0001_0.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1704144 Using database: database_357d5d93529_n_methylminirosetta_database ERROR: Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor). ERROR:: Exit from: ......srcprotocolscyclic_peptide_predictSimpleCycpepPredictApplication.cc line: 2264 BOINC:: Error reading and gzipping output datafile: default.out 14:08:09 (12636): called boinc_finish(1) </stderr_txt> ]]> |
Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0 |
Got the same thing: https://boinc.bakerlab.org/rosetta/result.php?resultid=1477896014 |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
Every single one failing, a thousand of them on 7 different computers. Until today, 98% of the 4.2s worked. |
Victor Wood Send message Joined: 3 Mar 20 Posts: 1 Credit: 6,564,469 RAC: 0 |
I am not sure if this is the same issue, but om both my M1 Macs I get work units offered, the download is almost nothing, (0.57Kb I saw once) and then I get once the tasks start "Computational Error" on all work units. I have stopped fetching new units for now. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
I am not sure if this is the same issue, but om both my M1 Macs I get work units offered, the download is almost nothing, (0.57Kb I saw once) and then I get once the tasks start "Computational Error" on all work units. I have stopped fetching new units for now.Most of mine are around 100KB on a Windows 11 machine. They produce a computation error in under a minute. I'm leaving my 7 computers running them, I guess if none work, they need them all back so they can do something about it. |
Gandolph1 Send message Joined: 3 Aug 21 Posts: 7 Credit: 577,267 RAC: 345 |
Every work unit is giving me an error immediately after starting. I've reset the project, still does the same thing... |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
Every work unit is giving me an error immediately after starting. I've reset the project, still does the same thing...Yet another bug. These should be tested on Ralph@home first. But there's no admins or programmers in here, in fact no way of contacting anyone here. Even emails to the head admin and David Baker himself are ignored. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1232 Credit: 14,269,631 RAC: 2,123 |
Looks like they are training someone in how to create workunits. But they haven't reached the point of checking if those workunits are likely to run, or how to read the forums. They haven't reached the point of checking the results, either. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
Looks like they are training someone in how to create workunits. Bit they haven't reached the point of checking if those workunits are likely to run, or how to read the forums.Be nice, they're American, they don't have the British intelligence. |
kotenok2000 Send message Joined: 22 Feb 11 Posts: 258 Credit: 483,503 RAC: 109 |
Neural net? |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
Neural net?They clearly aren't using that. To be this stupid requires a human. |
.clair. Send message Joined: 2 Jan 07 Posts: 274 Credit: 26,399,595 RAC: 0 |
only one and a half million work units left on the front page , Looks like we have shredded most of the preefab junk , I have a perfectly good shredder over there by the window`s , and if I want to use `shred` in Linux I can do the file in short order , Ahh , that`s it , it`s a `Banksy` original , self shredding work units , No `girl with balloon` this time , I knew they where working on something important , sort of . . Glad I don't have to pay for this lot . |
Jean-David Beyer Send message Joined: 2 Nov 05 Posts: 187 Credit: 6,383,310 RAC: 5,601 |
Well, it seems they are punishing me for the bad work units they have sent me. Wed 16 Mar 2022 09:03:42 PM EDT | Rosetta@home | Sending scheduler request: To fetch work. Wed 16 Mar 2022 09:03:42 PM EDT | Rosetta@home | Requesting new tasks for CPU Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | Scheduler request completed: got 0 new tasks Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | No tasks sent Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | Message from server: VirtualBox is not installed Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | This computer has finished a daily quota of 1 tasks <---<<< |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
only one and a half million work units left on the front page ,I just shredded 7 hard disks. No more mechanical rubbish here, only SSD and NVME. Wanna buy some used hard drives? Guaranteed all the porn er.... personal bank details removed. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
Well, it seems they are punishing me for the bad work units they have sent me.I've seen that somewhere before (perhaps not this project), but they don't seem to be punishing me yet, I've gone through several thousand bad Preetham 4.2 tasks. |
Jean-David Beyer Send message Joined: 2 Nov 05 Posts: 187 Credit: 6,383,310 RAC: 5,601 |
I've seen that somewhere before (perhaps not this project), but they don't seem to be punishing me yet, I've gone through several thousand bad Preetham 4.2 tasks. Well, for me maybe 400 tasks bombed out after 40 seconds or less. All in the last day or two. Definately not 1000. |
Mr P Hucker Send message Joined: 12 Aug 06 Posts: 1600 Credit: 11,717,270 RAC: 10,117 |
Mine are spread out over 7 computers. One computer doesn't seem to be held responsible for what another one does, especially since I use two accounts, one for Gridcoins and the other for when that messes up and won't give me the apps I want.I've seen that somewhere before (perhaps not this project), but they don't seem to be punishing me yet, I've gone through several thousand bad Preetham 4.2 tasks. |
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Number crunching :
Problems and Technical Issues with Rosetta@home
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