Problems and Technical Issues with Rosetta@home

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YAG

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Message 105457 - Posted: 16 Mar 2022, 6:28:14 UTC - in response to Message 105456.  

I am receiving the error "Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor).
ERROR:: Exit from: src/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc line: 2264" in the preetham_gen_* tasks.
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computezrmle

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Message 105458 - Posted: 16 Mar 2022, 7:19:49 UTC

The minimum number of residues for a cyclic peptide is 4.

Nowadays you need a specialist for nearly everything.
They obviously don't have a can-count-to-4-specialist on their payroll.
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wynx

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Message 105461 - Posted: 16 Mar 2022, 9:53:14 UTC - in response to Message 105457.  

I am receiving the error "Error in simple_cycpcp_predict app read_sequence() function! The minimum number of residues for a cyclic peptide is 4. (GenKIC requires three residues, plus a fourth to serve as an anchor).
ERROR:: Exit from: src/protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.cc line: 2264" in the preetham_gen_* tasks.

Getting the same thing here, lots of preetham_gen tasks with this issue atm.
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Tomcat雄猫

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Message 105468 - Posted: 16 Mar 2022, 19:06:50 UTC - in response to Message 105461.  
Last modified: 16 Mar 2022, 19:07:30 UTC

I haven't seen a working (on Windows) Rosetta 4.20 in ages.

These preetham tasks appear to have problems:
preetham_gen_16837_0001_0001_0_SAVE_ALL_OUT_2911317_735_1
<core_client_version>7.16.20</core_client_version>
<![CDATA[
<message>
Incorrect function.
 (0x1) - exit code 1 (0x1)</message>
<stderr_txt>
command: projects/boinc.bakerlab.org_rosetta/rosetta_4.20_windows_x86_64.exe @preetham_gen_16837_0001_0001_0.flags -nstruct 10000 -cpu_run_time 28800 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 1704144
Using database: database_357d5d93529_n_methylminirosetta_database

ERROR: Error in simple_cycpcp_predict app read_sequence() function!  The minimum number of residues for a cyclic peptide is 4.  (GenKIC requires three residues, plus a fourth to serve as an anchor).
ERROR:: Exit from: ......srcprotocolscyclic_peptide_predictSimpleCycpepPredictApplication.cc line: 2264
BOINC:: Error reading and gzipping output datafile: default.out
14:08:09 (12636): called boinc_finish(1)

</stderr_txt>
]]>
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Profile Greg_BE
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Message 105469 - Posted: 16 Mar 2022, 19:44:01 UTC - in response to Message 105468.  

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Mr P Hucker
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Message 105472 - Posted: 16 Mar 2022, 20:16:43 UTC
Last modified: 16 Mar 2022, 20:17:31 UTC

Every single one failing, a thousand of them on 7 different computers.

Until today, 98% of the 4.2s worked.
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Victor Wood

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Message 105473 - Posted: 16 Mar 2022, 20:17:11 UTC

I am not sure if this is the same issue, but om both my M1 Macs I get work units offered, the download is almost nothing, (0.57Kb I saw once) and then I get once the tasks start "Computational Error" on all work units. I have stopped fetching new units for now.
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Mr P Hucker
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Message 105475 - Posted: 16 Mar 2022, 20:19:37 UTC - in response to Message 105473.  
Last modified: 16 Mar 2022, 20:20:52 UTC

I am not sure if this is the same issue, but om both my M1 Macs I get work units offered, the download is almost nothing, (0.57Kb I saw once) and then I get once the tasks start "Computational Error" on all work units. I have stopped fetching new units for now.
Most of mine are around 100KB on a Windows 11 machine. They produce a computation error in under a minute. I'm leaving my 7 computers running them, I guess if none work, they need them all back so they can do something about it.
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Profile Gandolph1
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Message 105481 - Posted: 16 Mar 2022, 21:10:59 UTC - in response to Message 105475.  

Every work unit is giving me an error immediately after starting. I've reset the project, still does the same thing...
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Mr P Hucker
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Message 105482 - Posted: 16 Mar 2022, 22:23:01 UTC - in response to Message 105481.  

Every work unit is giving me an error immediately after starting. I've reset the project, still does the same thing...
Yet another bug. These should be tested on Ralph@home first. But there's no admins or programmers in here, in fact no way of contacting anyone here. Even emails to the head admin and David Baker himself are ignored.
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Profile robertmiles

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Message 105483 - Posted: 16 Mar 2022, 23:21:03 UTC
Last modified: 16 Mar 2022, 23:23:27 UTC

Looks like they are training someone in how to create workunits. But they haven't reached the point of checking if those workunits are likely to run, or how to read the forums. They haven't reached the point of checking the results, either.
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Mr P Hucker
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Message 105484 - Posted: 16 Mar 2022, 23:22:30 UTC - in response to Message 105483.  

Looks like they are training someone in how to create workunits. Bit they haven't reached the point of checking if those workunits are likely to run, or how to read the forums.
Be nice, they're American, they don't have the British intelligence.
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kotenok2000
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Message 105485 - Posted: 16 Mar 2022, 23:22:50 UTC - in response to Message 105483.  

Neural net?
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Mr P Hucker
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Message 105486 - Posted: 17 Mar 2022, 0:53:13 UTC - in response to Message 105485.  

Neural net?
They clearly aren't using that. To be this stupid requires a human.
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.clair.

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Message 105487 - Posted: 17 Mar 2022, 1:07:05 UTC

only one and a half million work units left on the front page ,
Looks like we have shredded most of the preefab junk ,
I have a perfectly good shredder over there by the window`s ,
and if I want to use `shred` in Linux I can do the file in short order ,
Ahh , that`s it , it`s a `Banksy` original , self shredding work units ,
No `girl with balloon` this time ,
I knew they where working on something important ,
sort of . .
Glad I don't have to pay for this lot .
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Jean-David Beyer

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Message 105488 - Posted: 17 Mar 2022, 1:30:47 UTC - in response to Message 105482.  

Well, it seems they are punishing me for the bad work units they have sent me.

Wed 16 Mar 2022 09:03:42 PM EDT | Rosetta@home | Sending scheduler request: To fetch work.
Wed 16 Mar 2022 09:03:42 PM EDT | Rosetta@home | Requesting new tasks for CPU
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | Scheduler request completed: got 0 new tasks
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | No tasks sent
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | Message from server: VirtualBox is not installed
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | This computer has finished a daily quota of 1 tasks <---<<<
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Mr P Hucker
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Message 105489 - Posted: 17 Mar 2022, 1:47:44 UTC - in response to Message 105487.  
Last modified: 17 Mar 2022, 1:50:00 UTC

only one and a half million work units left on the front page ,
Looks like we have shredded most of the preefab junk ,
I have a perfectly good shredder over there by the window`s ,
and if I want to use `shred` in Linux I can do the file in short order ,
Ahh , that`s it , it`s a `Banksy` original , self shredding work units ,
No `girl with balloon` this time ,
I knew they where working on something important ,
sort of . .
Glad I don't have to pay for this lot .
I just shredded 7 hard disks. No more mechanical rubbish here, only SSD and NVME. Wanna buy some used hard drives? Guaranteed all the porn er.... personal bank details removed.
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Mr P Hucker
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Message 105490 - Posted: 17 Mar 2022, 1:49:35 UTC - in response to Message 105488.  

Well, it seems they are punishing me for the bad work units they have sent me.

Wed 16 Mar 2022 09:03:42 PM EDT | Rosetta@home | Sending scheduler request: To fetch work.
Wed 16 Mar 2022 09:03:42 PM EDT | Rosetta@home | Requesting new tasks for CPU
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | Scheduler request completed: got 0 new tasks
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | No tasks sent
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | Message from server: VirtualBox is not installed
Wed 16 Mar 2022 09:03:46 PM EDT | Rosetta@home | This computer has finished a daily quota of 1 tasks <---<<<
I've seen that somewhere before (perhaps not this project), but they don't seem to be punishing me yet, I've gone through several thousand bad Preetham 4.2 tasks.
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Jean-David Beyer

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Message 105491 - Posted: 17 Mar 2022, 2:30:22 UTC - in response to Message 105490.  

I've seen that somewhere before (perhaps not this project), but they don't seem to be punishing me yet, I've gone through several thousand bad Preetham 4.2 tasks.


Well, for me maybe 400 tasks bombed out after 40 seconds or less. All in the last day or two. Definately not 1000.
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Mr P Hucker
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Message 105492 - Posted: 17 Mar 2022, 2:52:41 UTC - in response to Message 105491.  

I've seen that somewhere before (perhaps not this project), but they don't seem to be punishing me yet, I've gone through several thousand bad Preetham 4.2 tasks.


Well, for me maybe 400 tasks bombed out after 40 seconds or less. All in the last day or two. Definately not 1000.
Mine are spread out over 7 computers. One computer doesn't seem to be held responsible for what another one does, especially since I use two accounts, one for Gridcoins and the other for when that messes up and won't give me the apps I want.
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Message boards : Number crunching : Problems and Technical Issues with Rosetta@home



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