Rosetta's role in fighting coronavirus

Message boards : News : Rosetta's role in fighting coronavirus

To post messages, you must log in.

Previous · 1 · 2 · 3 · 4 · 5 · 6 . . . 27 · Next

AuthorMessage
Jim1348

Send message
Joined: 19 Jan 06
Posts: 881
Credit: 52,257,545
RAC: 0
Message 92064 - Posted: 18 Mar 2020, 20:14:45 UTC - in response to Message 92063.  
Last modified: 18 Mar 2020, 20:18:23 UTC

The Review you linked was indeed written by some of the OpenZika Researchers but it has nothing to do with WCG.

I think that was a rather artful way of stating it.
Since the WCG projects are conducted by scientists, and since he was, and potentially is, a scientist working on a WCG project, then if he indicates there is a possibility for more WCG work, then there is.
QED
ID: 92064 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Falconet

Send message
Joined: 9 Mar 09
Posts: 353
Credit: 1,227,479
RAC: 1,836
Message 92066 - Posted: 18 Mar 2020, 20:18:13 UTC - in response to Message 92064.  
Last modified: 18 Mar 2020, 20:22:14 UTC

They might run a new project in the future, but that was not the interpretation I made from the Review.
They speak about lessons learned from the OpenZika project regarding the computations, targets and libraries of compounds, etc but nothing about running anything at WCG in the future.
ID: 92066 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Jim1348

Send message
Joined: 19 Jan 06
Posts: 881
Credit: 52,257,545
RAC: 0
Message 92068 - Posted: 18 Mar 2020, 20:30:30 UTC - in response to Message 92066.  
Last modified: 18 Mar 2020, 20:35:26 UTC

I don't think he was stating there would necessarily be more work either, but it looked like a possible future direction to me.

EDIT: But what I found more curious was the need by WCG to distance themselves from that possibility. I guess they just don't want their hands tied, or any implication of their future work. OK, fair enough if that is what they want.
ID: 92068 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Falconet

Send message
Joined: 9 Mar 09
Posts: 353
Credit: 1,227,479
RAC: 1,836
Message 92069 - Posted: 18 Mar 2020, 20:36:11 UTC - in response to Message 92068.  
Last modified: 18 Mar 2020, 20:39:03 UTC

The whole point of the review seemed to me like a proposal to a Vina-based OpenSARS-Cov-2 project, yes I agree! But not necessarily run on WCG (they speak about reduced targets and compound libraries maybe small enough to be computed internally).

We'll see.
ID: 92069 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
sfobrian

Send message
Joined: 18 Mar 20
Posts: 1
Credit: 79,032
RAC: 0
Message 92095 - Posted: 20 Mar 2020, 0:17:04 UTC - in response to Message 92010.  
Last modified: 20 Mar 2020, 0:18:02 UTC

Don't request tasks for NVIDIA GPU
Project has no apps for NVIDIA GPU

Is this CPU only?


Yeah, I ran into this too and banged my head against a wall too long until I figured out. why Rosetta wasn't using my GPUs..

However, since F@H appears to support GPU folding for their COVID efforts, I run BOINC on my CPUs for Rosetta@Home, and F@H on only a GPU slot for their folding projects so they don't interfere with each other. However, F@H is so overwhelmed with new volunteers right now, they're frequently running out of Work Units, or otherwise have some server-side delays in getting enough work out to the idle GPU workers (at least from what I understand from their posts).


A heads-up before any Mac users get excited: the MacOS F@H client does NOT support GPU folding. If you have a supported GPU, you will need to use Bootcamp to run the Windows or Linux F@H client in order to do GPU folding on your Mac (hardware) to help with COVID-19.

Otherwise if you really want to put your GPU to use, you can try tweaking AnonymousPryme's script and use BOINC on your GPU for a different project (that uses GPUs) and CPU for Rosetta/COVID-19.
ID: 92095 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
John Twohy

Send message
Joined: 8 Oct 08
Posts: 8
Credit: 784,245
RAC: 0
Message 92097 - Posted: 20 Mar 2020, 2:56:57 UTC - in response to Message 92095.  

will get to be the largest cluster computer in the world like it was a decade ago.
ID: 92097 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
rdea

Send message
Joined: 20 Mar 20
Posts: 2
Credit: 592,455
RAC: 0
Message 92101 - Posted: 20 Mar 2020, 18:25:05 UTC

All my cpu from Spain with the project. Go!
ID: 92101 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
John Twohy

Send message
Joined: 8 Oct 08
Posts: 8
Credit: 784,245
RAC: 0
Message 92102 - Posted: 20 Mar 2020, 18:33:55 UTC - in response to Message 92101.  

for time on GPU's use GPUGRID
ID: 92102 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
John Twohy

Send message
Joined: 8 Oct 08
Posts: 8
Credit: 784,245
RAC: 0
Message 92103 - Posted: 20 Mar 2020, 18:43:11 UTC - in response to Message 92095.  
Last modified: 20 Mar 2020, 18:44:45 UTC

F@H it gives no hash points might be a (bitcoin miner) screen saver doesn't work. and is independent software not in the list of boinc links. https://www.bleepingcomputer.com/news/security/redline-info-stealing-malware-spread-by-folding-home-phishing/?fbclid=IwAR0knzCKOHKtXMqiAQV1_FYppv0iOhKI8RuxGkQvb_w7DJL0cBiooEeBVJc#.XnPOybn_1k4.facebook
ID: 92103 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
rdea

Send message
Joined: 20 Mar 20
Posts: 2
Credit: 592,455
RAC: 0
Message 92104 - Posted: 20 Mar 2020, 20:55:43 UTC - in response to Message 92102.  

Thanks, I will put the equipment that I have with GPU as you tell me.
ID: 92104 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Tim Taylor

Send message
Joined: 18 Mar 20
Posts: 1
Credit: 22,201
RAC: 0
Message 92106 - Posted: 20 Mar 2020, 21:44:11 UTC

Joining in from London on both my macs! Also running Folding@home too.
Glad to help.
ID: 92106 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Guillaume Van Hemmen

Send message
Joined: 19 Mar 20
Posts: 1
Credit: 751,658
RAC: 0
Message 92109 - Posted: 21 Mar 2020, 8:35:07 UTC

joining the fight with my 4 MBP ;)
ID: 92109 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Profile [VENETO] boboviz

Send message
Joined: 1 Dec 05
Posts: 1994
Credit: 9,573,506
RAC: 7,165
Message 92111 - Posted: 21 Mar 2020, 9:20:08 UTC

Welcome to all new members!!
ID: 92111 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Dotsch
Avatar

Send message
Joined: 12 Feb 06
Posts: 111
Credit: 241,803
RAC: 0
Message 92115 - Posted: 21 Mar 2020, 18:46:01 UTC

From the form post and tweets, for me the situation relating COVID-19 work is not clear.
Is there in the moment any COVID-19 related work in progress?
What exactlly will be processed by Rosetta?
ID: 92115 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Ivailo Bonev

Send message
Joined: 9 May 07
Posts: 15
Credit: 4,285,869
RAC: 0
Message 92117 - Posted: 22 Mar 2020, 0:42:37 UTC
Last modified: 22 Mar 2020, 0:54:48 UTC

Here we go, my first unit for COVID-19 related research!

ID: 92117 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Discarded

Send message
Joined: 6 Apr 19
Posts: 5
Credit: 91,866
RAC: 0
Message 92118 - Posted: 22 Mar 2020, 3:47:21 UTC
Last modified: 22 Mar 2020, 3:48:04 UTC

They seems to be aware of recent increase in volunteers concerned about the coronavirus outbreak.
I can see a few of workunits have literal "COVID-19" text string in the name, and "SAVE_ALL_OUT" suffix to every single one of them including non-covid WUs.
I believe at least it will help us keeping adequate amount of hopes, so that we don't lose our sanity by unbearable fear.
ID: 92118 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
test

Send message
Joined: 20 Mar 20
Posts: 1
Credit: 0
RAC: 0
Message 92125 - Posted: 22 Mar 2020, 11:19:45 UTC

As team founder, I would like to join the project so that my volunteers can participate in the fight against the COVID19. Do any of the project Admins have any idea how long it will take to research this? Will the supply of WU's be spread over days, weeks or months? Just to get an idea. Thanks for your reply.
ID: 92125 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
BORG315

Send message
Joined: 23 Apr 13
Posts: 4
Credit: 988,746
RAC: 0
Message 92127 - Posted: 22 Mar 2020, 13:54:39 UTC - in response to Message 91772.  

Are we still running models to help fight corona?
ID: 92127 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
shadzofsilver

Send message
Joined: 8 Oct 07
Posts: 1
Credit: 30,897
RAC: 0
Message 92128 - Posted: 22 Mar 2020, 15:42:25 UTC - in response to Message 92127.  

Yes. I have a few work units with "COVID-19" in their name.
ID: 92128 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
torma99

Send message
Joined: 16 Feb 20
Posts: 14
Credit: 288,937
RAC: 0
Message 92131 - Posted: 22 Mar 2020, 16:32:24 UTC - in response to Message 92127.  

My computer also crunches a covid work unit right now.
ID: 92131 · Rating: 0 · rate: Rate + / Rate - Report as offensive    Reply Quote
Previous · 1 · 2 · 3 · 4 · 5 · 6 . . . 27 · Next

Message boards : News : Rosetta's role in fighting coronavirus



©2024 University of Washington
https://www.bakerlab.org