Message boards : News : Rosetta's role in fighting coronavirus
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jond Send message Joined: 28 May 07 Posts: 3 Credit: 13,865 RAC: 0 |
Very cool! |
Falconet Send message Joined: 9 Mar 09 Posts: 354 Credit: 1,276,393 RAC: 3,000 |
Yep. I check this thread every 2-3 days just to see if anything new is posted. Bit of a let-down that there was a lot of communication early on, and now radio silence for a while. It's in Rosetta's self-interest to update their volunteers. I can't possibly understand why they could not have copy pasted their tweet, post here and send out a notice to BOINC clients. |
yoerik Send message Joined: 24 Mar 20 Posts: 128 Credit: 169,525 RAC: 0 |
it's hard to fathom. You and I are both familiar with WCG's efforts to keep us up to date - it takes minimal effort to keep us informed. The lack of this communication as a newer volunteer is concerning. I've taken steps to reduce my contribution to Rosetta - I will crunch WCG full time if this communication issue continues into next month. I just cannot justify a higher electricity bill for a project that doesn't have the will to issue the simplest of updates. It's almost insulting. |
Bobzilla Send message Joined: 11 May 20 Posts: 7 Credit: 421,897 RAC: 0 |
I'm just here for the free beer, what no beer? Damn stupid Covid 19 research, wait.. research can save beer workers? WOOHOO! With beer all things are possible, although some of them should not be done. |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
I've noticed that all of my computers have barely received any new Covid tasks for crunching during the past few days :-( Has research in Covid been stopped by Rosetta? Please let us know. |
mikey Send message Joined: 5 Jan 06 Posts: 1895 Credit: 9,214,047 RAC: 2,155 |
I've noticed that all of my computers have barely received any new Covid tasks for crunching during the past few days :-( Each of your pc's has several tasks on it now, each is taking around 6 hours to finish each task so it depends on your cache settings. But remember there is a 3 day return deadline for each task here so a large cache is not a good idea. |
yoerik Send message Joined: 24 Mar 20 Posts: 128 Credit: 169,525 RAC: 0 |
I've noticed that all of my computers have barely received any new Covid tasks for crunching during the past few days :-( not all COVID-19 tasks are labeled COVID-19 - so unless it is clearly labelled for us lay people to understand - we have no way of 100% knowing which ones are COVID related, and which ones aren't. |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
not all COVID-19 tasks are labeled COVID-19 - so unless it is clearly labelled for us lay people to understand - we have no way of 100% knowing which ones are COVID related, and which ones aren't.which is too bad, though; I would very much be interested in knowing. |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
I guess, some time ago someone here mentioned that tasks with "robetta" in their name (starting with "rb_...") are also related to Covid? Is this correct? |
Falconet Send message Joined: 9 Mar 09 Posts: 354 Credit: 1,276,393 RAC: 3,000 |
I guess, some time ago someone here mentioned that tasks with "robetta" in their name (starting with "rb_...") are also related to Covid? Is this correct? Some Robetta tasks are COVID-19 related but not all. See: robetta.bakerlab.org/queue.php You can check if there's any COVID-19 work available. You can search using the "target" field for keywords like "cov" "covid" "sars". If some of the jobs are marked active, it likely means there is work available or in progress at rosetta@home. |
Erich56 Send message Joined: 11 Jan 16 Posts: 35 Credit: 1,437,503 RAC: 0 |
I've noticed that all of my computers have barely received any new Covid tasks for crunching during the past few days :-( it's too bad that there is no clear indication as to whether a task is related to COVID or not. In fact, none of the tasks my computers have received during the past 3 or 4 days were labeld "COVID" - so I assume that most of them were NOT Covid-related. In a way it seems rather unlogical that some of the COVID tasks are labeled as "COVID", others are not. What sense does this make? Given the fact that so many people joined Rosetta recently as they wanted to help with COVID research, facts should be made clear. I would even suggest that we people can choose between COVID-related and other tasks. This is possible, for example, at Folding@Home and WordCommunityGrid. So any cruncher is free to make his/her choice - which is exactly the way it should be. Meanwhile, I have switched some of my machines to projects where I can choose COVID exclusively. For me personally, it's important to use my computational power for fighting agains COVID. As soon as I can do this here at Rosetta, too, I'll be glad to come back. with all my computers. |
Remarc Send message Joined: 23 Mar 20 Posts: 14 Credit: 302,773 RAC: 0 |
I reject any tasks that don't have a label covid-19 and in recent days for some reason they are almost absent |
Falconet Send message Joined: 9 Mar 09 Posts: 354 Credit: 1,276,393 RAC: 3,000 |
Robetta tasks are not run by the Rosetta@home scientists but by outside scientists. It's a public service. Tasks are named by those outside scientists. |
Sid Celery Send message Joined: 11 Feb 08 Posts: 2137 Credit: 41,518,559 RAC: 15,775 |
I've noticed that all of my computers have barely received any new Covid tasks for crunching during the past few days :-( This isn't an assumption you can reasonably make. Some will, some won't. My understanding is tasks that come via Robetta are from other labs who use their own naming convention, not under the control to Rosetta. Checking back, I note the Veesler Lab submits tasks - they're the ones who discovered that antibodies to the original SARS-Cov (2003) virus also apply to SARS-Cov-2 as i posted in Cafe recently. Also note tasks can focus on interfacebinders to specific sites and I'm not clear these fragments get labelled CV19 when they're highly relevant to the issue. Meanwhile, I have switched some of my machines to projects where I can choose COVID exclusively. For me personally, it's important to use my computational power for fighting against COVID. I agree completely, but I'm concentrating my resources here with only the occasional switch to WCG's Open Pandemics sub-project on my PCs (exclusively WCG on my phone while there's the issue with Rosetta on BOINC Android)[/quote] |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,994 |
There has been a discussion that Folding@home is likely to produce a BOINC version soon, Not ready yet, though. I've seen, but not investigated, a project that does COVID-19 work on GPUs, but under Linux only. You might want to check if it has similar dependency problems. NOT a BOINC project. Quarantine@Home (GPU only for Linux) https://quarantine.infino.me/ |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,994 |
I reject any tasks that don't have a label covid-19 and in recent days for some reason they are almost absent I've seen that too. |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,994 |
[snip] Meanwhile, I have switched some of my machines to projects where I can choose COVID exclusively. For me personally, it's important to use my computational power for fighting agains COVID. What such projects have you found? So far, I've found: BOINC: World Community Grid want more people to do this. https://join.worldcommunitygrid.org?recruiterId=480838 Make sure you enable the Open Pandemics work, which will be mainly for COVID-19 at first. You should choose settings that allow doing other types of work if the COVID-19 work runs low. I've seen, but lost a link to, a BOINC site that assumes you can follow instructions written in Spanish. One more BOINC project that has finished its COVID-19 work and does NOT want to be widely advertised. Non-BOINC: Foldin@home main https://foldingathome.org/ Folding@Home Forum (separate account creation required) https://foldingforum.org/index.php Quarantine@Home (GPU only for Linux) https://quarantine.infino.me/ |
mikey Send message Joined: 5 Jan 06 Posts: 1895 Credit: 9,214,047 RAC: 2,155 |
[snip] You can add TN-Grid to the Boinc Projects doing Covid-19 research: http://gene.disi.unitn.it/test/ and Ibercivis is also a Boinc Project doing COVID-19 research too but they have been down for a few days: [url]https://boinc.ibercivis.es/ibercivis/[url] |
robertmiles Send message Joined: 16 Jun 08 Posts: 1233 Credit: 14,338,560 RAC: 2,994 |
I found the lost link. Not very useful unless you can follow instructions written in Spanish. https://boinc.ibercivis.es/ibercivis/ TN-Grid is the one that does not want to be widely advertised - little spare server capacity - and appears to have run out of COVID-19 work. |
manalog Send message Joined: 8 Apr 15 Posts: 24 Credit: 233,155 RAC: 0 |
https://twitter.com/RosettaAtHome/status/1276324129390555136 We have some BIG NEWS: Researchers @UWproteindesign have succeeded in creating antiviral proteins that neutralize the new coronavirus in the lab. (These experimental drugs are being optimized for animal trials now) THANK YOU for helping out! Join in: https://boinc.bakerlab.org |
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Rosetta's role in fighting coronavirus
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