"large w/u I cannot find on list"

Message boards : Rosetta@home Science : "large w/u I cannot find on list"

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Profile Doug Worrall
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Message 22386 - Posted: 13 Aug 2006, 11:39:56 UTC


Hello Rosey crunchers and staff and scientist,
Have been not able to crunch Rosey for a while and am trying again, after Ralph worked well,than ran out of w/u,s.The w/u is 5.25 for Linux
FRA_1368_CASPR_homOO1_6_1368_4_InaOA16NORE
Have finsihed 58.24 minutes with 1.563% with 19:16:24
remaining.If I need to reboot the w/u would start at beginning again and Fubar.Has this been rectified?,or,
if I must reboot "suspend" the app first?
Thanking-You in advace
Sincerely
Doug*
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Profile KSMarksPsych
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Message 22427 - Posted: 14 Aug 2006, 0:58:21 UTC

What is your runtime preference?

The estimated time to completion usually isn't accurate b/c the percent complete only updates at the end of a model.

If you can take a peak at the graphics look for the end of a model (don't know how many step it is tho). It will checkpoint at the end of each model.
Kathryn :o)
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Profile Feet1st
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Message 22430 - Posted: 14 Aug 2006, 1:40:23 UTC - in response to Message 22386.  
Last modified: 14 Aug 2006, 1:41:14 UTC

Have finsihed 58.24 minutes with 1.563% with 19:16:24
remaining.

Doug, welcome back to Rosetta! I see you've now aborted that WU. For future reference these CASP proteins are quite large and the science of Rosetta is only useful when you compelete at least one model. Net result, large proteins take considerably longer to complete one model.

Don't worry too much about the time remaining and as KS says, the % complete is only recomputed after each model. It increments a few times during a model, but these are just indications that checkpoints have been reached. It's a common question, I tried to explain in detail in two QA items on the subject. This one, and the one that follows it.

No harm done. But in the future you'll want to be sure and give it at least 3 hrs runtime before you worry too much about it being "stuck". The stuck on 1% bug has long since been addressed. Once it completes that first model, it may decide that this is a good time to quite crunching on that WU in order to try and stay in line with your runtime preference. This is in your Rosetta preferences.

Add this signature to your EMail:
Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might!
https://boinc.bakerlab.org/rosetta/
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Message boards : Rosetta@home Science : "large w/u I cannot find on list"



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